The .modelcraft file, undo/redo on the journal, atomic saves and autosave recovery (M3) (#21)

* modelcraft-io: the .modelcraft file (modelcraft/1), atomic writes, autosave storage

A stored ZIP of a manifest (format tag, geometry sources with SHA-256,
part sizes and hashes), the model definition as stable pretty JSON, the
mesh and geometry tags in a compact binary part, and the journal one
command per line. Reading caps every size, checks every checksum and
replays the model through its checked methods. Model::without_mesh and
empty mesh fields left out of the model's JSON; geometry::read_file.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01NmAttHhUZTokgPeEJia8sm

* engine: undo/redo on the journal, file.open/save/save_as, autosave and recovery

CommandSpec gains a kind: Model commands are journalled and become undo
steps; Session commands (file.*, edit.*) manage the session. Undo history
is bounded by steps and estimated memory. Geometry sources are recorded
with content hashes and reopened on file.open (missing or changed files
are warnings). Desktop app autosaves every 30 s and reports recoverable
models; Ctrl/Cmd+Z and Shift+Z/Y undo and redo.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01NmAttHhUZTokgPeEJia8sm

* docs: the .modelcraft format, undo history, roadmap and parity status

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01NmAttHhUZTokgPeEJia8sm

* simplify: shared path parameter, one load path for open/recover, history accounting in History

Session commands skip the per-command model copy; saved revision is an
Option; journal written from borrowed entries and read without an
intermediate tree; backups copied by the file system; recovery lock and
error helpers; geometry file wrappers use read_file.

Co-Authored-By: Claude Opus 5.5 <[email protected]>
Claude-Session: https://claude.ai/code/session_01NmAttHhUZTokgPeEJia8sm

---------

Co-authored-by: jyviko <[email protected]>
Co-authored-by: Claude Opus 5.5 <[email protected]>

ROADMAP.md

@@ -21,7 +21,7 @@ hex meshes today and it gives the best elements where stresses are read.
 | M0 Foundation | Workspace, quality gates, FE model, command engine with rollback and panic guard, CLI, geometry boundary on SolidCraft | done |
 | M1 Geometry in and surface preparation | Open `.solidcraft` designs with persistent face names, assemblies placed (done); face-tagged 3MF (done); test corpus, `cargo xtask corpus` (done); exact predicates (done); quality metrics and certified validity gate (done); weld, closed/manifold/orientation and self-intersection checks, feature edges (`modelcraft-mesh::surface`, `mesh.surface.check`, done) | in progress |
 | M2 Tet meshing and size field | Size field (global, per face and edge seeds, curvature and proximity; the `modelcraft_mesh::size::SizeField` trait and edge-division helpers are in); Bowyer–Watson Delaunay (exact, symbolic perturbation, verified; `modelcraft-mesh::delaunay`, done); robust CDT boundary recovery (Diazzi et al. 2023); Delaunay refinement, ODT smoothing, sliver removal; tet4 and tet10 with mid-side nodes on the B-rep; mesh verify per set | in progress |
-| M3 First deck | Sets and surfaces bound to SolidCraft face, edge, vertex and body names, resolved after meshing; materials (isotropic and orthotropic elastic, density) with a unit-system label and consistency check; sections (solid, shell, beam profiles) assigned by set; element formulation per region mapped to each solver; BCs (fixed, displacement, symmetry); loads (force and moment on reference points, pressure, gravity); reference points with kinematic and distributing coupling; steps (linear static, frequency) with explicit per-step load and BC tables and output presets; `model.check` naming every missing or bad item; `model.*` and `mesh.tag` commands (model definition: done); writers for Abaqus input, Nastran SOL 101/103 and LS-DYNA implicit; the `.modelcraft` file | in progress |
+| M3 First deck | Sets and surfaces bound to SolidCraft face, edge, vertex and body names, resolved after meshing; materials (isotropic and orthotropic elastic, density) with a unit-system label and consistency check; sections (solid, shell, beam profiles) assigned by set; element formulation per region mapped to each solver; BCs (fixed, displacement, symmetry); loads (force and moment on reference points, pressure, gravity); reference points with kinematic and distributing coupling; steps (linear static, frequency) with explicit per-step load and BC tables and output presets; `model.check` naming every missing or bad item; `model.*` and `mesh.tag` commands (model definition: done); writers for Abaqus input, Nastran SOL 101/103 and LS-DYNA implicit; the `.modelcraft` file (text definition, binary mesh, geometry references reopened on load, journal; atomic saves, autosave and recovery; undo/redo on the journal: done) | in progress |
 | M4 Own solver and first results | Linear static and modal solver (tet4/10, hex8, hex20; sparse direct, Lanczos), verified against analytic solutions; deformed shape, contours, mode shapes, probes, reaction sums | planned |
 | M5 Structured hex | 2D quad meshing of faces (`modelcraft-mesh::quad`: transfinite mapped meshes, free all-quad meshes of polygons with holes on prescribed boundary nodes, exact planar quad validity, shared `SizeField` and even edge divisions; done for planar faces); mapped hex of six-sided regions; sweep meshing; conforming interfaces and tet–hex transition; automatic decomposition into sweepable and mappable regions, proposed as SolidCraft splits | started |
 | M6 Automatic hex | Octree/grid-dual all-hex for any part; hex-dominant by tet recombination; polycube for blocky parts; smoothing, untangling, boundary padding, layers through thin walls; mesh editing and orphan-mesh import | planned |